Explore Transcription Start Sites Across Species
TSSHub provides a comprehensive database of TSS data for 100+ species, integrating JBrowse genome browsers, CAGE publication references, and downloadable genomic resources.
Model organism collection
Featured Species
Quick access to model organisms
Database at a Glance
Real-time statistics from our growing TSS database
101
Species
19 animals · 17 plants · 65 fungi
149
BioProjects
NCBI BioProject references
112
CAGE Papers
Curated publications
30
JBrowse Genomes
Interactive genome browsers
Trusted by Researchers
What scientists around the world say about TSSHub
“TSSHub has been invaluable for our comparative promoter analysis across mammalian species. Having CAGE data and JBrowse in one place saves us hours every week.”
Postdoctoral Researcher
Stanford University
“The species coverage for fungi is unmatched. We use TSSHub daily to verify TSS annotations in our yeast CAGE experiments.”
Principal Investigator
University of Tokyo
“As a plant biologist, finding TSS data for non-model species was always painful. TSSHub covers 17 plant species with consistent processing — exactly what I needed for my thesis.”
PhD Candidate
Max Planck Institute
“I recommend TSSHub to every lab working on transcription initiation. The downloadable BigWig files and standardized pipeline are what the field has been missing.”
Bioinformatics Core Director
MIT
“The phylogenetic tree view combined with species-level TSS data gives a unique perspective on promoter evolution that no other database offers.”
Associate Professor
ETH Zürich
“TSSHub has been invaluable for our comparative promoter analysis across mammalian species. Having CAGE data and JBrowse in one place saves us hours every week.”
Postdoctoral Researcher
Stanford University
“The species coverage for fungi is unmatched. We use TSSHub daily to verify TSS annotations in our yeast CAGE experiments.”
Principal Investigator
University of Tokyo
“As a plant biologist, finding TSS data for non-model species was always painful. TSSHub covers 17 plant species with consistent processing — exactly what I needed for my thesis.”
PhD Candidate
Max Planck Institute
“I recommend TSSHub to every lab working on transcription initiation. The downloadable BigWig files and standardized pipeline are what the field has been missing.”
Bioinformatics Core Director
MIT
“The phylogenetic tree view combined with species-level TSS data gives a unique perspective on promoter evolution that no other database offers.”
Associate Professor
ETH Zürich
“TSSHub has been invaluable for our comparative promoter analysis across mammalian species. Having CAGE data and JBrowse in one place saves us hours every week.”
Postdoctoral Researcher
Stanford University
“The species coverage for fungi is unmatched. We use TSSHub daily to verify TSS annotations in our yeast CAGE experiments.”
Principal Investigator
University of Tokyo
“As a plant biologist, finding TSS data for non-model species was always painful. TSSHub covers 17 plant species with consistent processing — exactly what I needed for my thesis.”
PhD Candidate
Max Planck Institute
“I recommend TSSHub to every lab working on transcription initiation. The downloadable BigWig files and standardized pipeline are what the field has been missing.”
Bioinformatics Core Director
MIT
“The phylogenetic tree view combined with species-level TSS data gives a unique perspective on promoter evolution that no other database offers.”
Associate Professor
ETH Zürich
“TSSHub has been invaluable for our comparative promoter analysis across mammalian species. Having CAGE data and JBrowse in one place saves us hours every week.”
Postdoctoral Researcher
Stanford University
“The species coverage for fungi is unmatched. We use TSSHub daily to verify TSS annotations in our yeast CAGE experiments.”
Principal Investigator
University of Tokyo
“As a plant biologist, finding TSS data for non-model species was always painful. TSSHub covers 17 plant species with consistent processing — exactly what I needed for my thesis.”
PhD Candidate
Max Planck Institute
“I recommend TSSHub to every lab working on transcription initiation. The downloadable BigWig files and standardized pipeline are what the field has been missing.”
Bioinformatics Core Director
MIT
“The phylogenetic tree view combined with species-level TSS data gives a unique perspective on promoter evolution that no other database offers.”
Associate Professor
ETH Zürich
“Having worked on FANTOM, I appreciate TSSHub's approach of integrating CAGE data with modern genome browsers. It makes our published data much more accessible.”
Research Scientist
RIKEN
“We used TSSHub to identify conserved TSS patterns in our cross-species enhancer study. The consistent data format across all species was crucial for our pipeline.”
Postdoctoral Fellow
University of Cambridge
“TSSHub is the first resource I check when starting a new gene regulation project. The search function and JBrowse integration make exploring TSS data incredibly intuitive.”
Graduate Student
Peking University
“For our clinical genomics work, having reliable TSS annotations across model organisms is essential. TSSHub delivers this with an elegant, easy-to-use interface.”
Senior Scientist
Karolinska Institutet
“The CAGE publication cross-references linked to each species are incredibly helpful for finding relevant papers and methodologies for our own CAGE-seq experiments.”
Assistant Professor
National Taiwan University
“Having worked on FANTOM, I appreciate TSSHub's approach of integrating CAGE data with modern genome browsers. It makes our published data much more accessible.”
Research Scientist
RIKEN
“We used TSSHub to identify conserved TSS patterns in our cross-species enhancer study. The consistent data format across all species was crucial for our pipeline.”
Postdoctoral Fellow
University of Cambridge
“TSSHub is the first resource I check when starting a new gene regulation project. The search function and JBrowse integration make exploring TSS data incredibly intuitive.”
Graduate Student
Peking University
“For our clinical genomics work, having reliable TSS annotations across model organisms is essential. TSSHub delivers this with an elegant, easy-to-use interface.”
Senior Scientist
Karolinska Institutet
“The CAGE publication cross-references linked to each species are incredibly helpful for finding relevant papers and methodologies for our own CAGE-seq experiments.”
Assistant Professor
National Taiwan University
“Having worked on FANTOM, I appreciate TSSHub's approach of integrating CAGE data with modern genome browsers. It makes our published data much more accessible.”
Research Scientist
RIKEN
“We used TSSHub to identify conserved TSS patterns in our cross-species enhancer study. The consistent data format across all species was crucial for our pipeline.”
Postdoctoral Fellow
University of Cambridge
“TSSHub is the first resource I check when starting a new gene regulation project. The search function and JBrowse integration make exploring TSS data incredibly intuitive.”
Graduate Student
Peking University
“For our clinical genomics work, having reliable TSS annotations across model organisms is essential. TSSHub delivers this with an elegant, easy-to-use interface.”
Senior Scientist
Karolinska Institutet
“The CAGE publication cross-references linked to each species are incredibly helpful for finding relevant papers and methodologies for our own CAGE-seq experiments.”
Assistant Professor
National Taiwan University
“Having worked on FANTOM, I appreciate TSSHub's approach of integrating CAGE data with modern genome browsers. It makes our published data much more accessible.”
Research Scientist
RIKEN
“We used TSSHub to identify conserved TSS patterns in our cross-species enhancer study. The consistent data format across all species was crucial for our pipeline.”
Postdoctoral Fellow
University of Cambridge
“TSSHub is the first resource I check when starting a new gene regulation project. The search function and JBrowse integration make exploring TSS data incredibly intuitive.”
Graduate Student
Peking University
“For our clinical genomics work, having reliable TSS annotations across model organisms is essential. TSSHub delivers this with an elegant, easy-to-use interface.”
Senior Scientist
Karolinska Institutet
“The CAGE publication cross-references linked to each species are incredibly helpful for finding relevant papers and methodologies for our own CAGE-seq experiments.”
Assistant Professor
National Taiwan University